STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ98353.1Hypothetical protein. (321 aa)    
Predicted Functional Partners:
SFQ98362.1
O-antigen ligase.
 
     0.854
SFQ98358.1
Hypothetical protein.
 
     0.806
SFQ98322.1
Nitrate/nitrite transporter NarK.
     0.789
SFR16035.1
Nitrate/nitrite transporter NarK.
     0.785
SFR28627.1
Nitrate/nitrite transporter NarK.
     0.782
SFR12433.1
Hypothetical protein.
  
 0.761
SFR18564.1
Hypothetical protein.
  
 0.761
SFR25835.1
Hypothetical protein.
  
 0.761
SFR28411.1
Peptidase_C39 like family protein.
  
 0.761
SFR26975.1
Hypothetical protein.
   
 
 0.744
Your Current Organism:
Lentzea waywayandensis
NCBI taxonomy Id: 84724
Other names: ATCC 51594, DSM 44232, IFO 14970, JCM 9114, L. waywayandensis, NBRC 14970, NRRL B-16159, Saccharothrix waywayandensis, strain LL-37Z-15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.