STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ98815.1Uncharacterized conserved protein. (140 aa)    
Predicted Functional Partners:
SFR27542.1
RNA polymerase sigma factor, sigma-70 family.
 
     0.779
SFR27752.1
RNA polymerase sigma factor, sigma-70 family.
 
     0.777
SFR06869.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.774
SFR16120.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.
 
     0.772
SFR27441.1
RNA polymerase sigma factor, sigma-70 family.
 
     0.770
SFR29605.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.
 
     0.769
SFR06865.1
Uncharacterized conserved protein.
  
     0.768
SFR27557.1
Uncharacterized conserved protein.
  
     0.768
SFR27443.1
Uncharacterized conserved protein.
  
     0.768
SFR29606.1
Uncharacterized conserved protein.
  
     0.763
Your Current Organism:
Lentzea waywayandensis
NCBI taxonomy Id: 84724
Other names: ATCC 51594, DSM 44232, IFO 14970, JCM 9114, L. waywayandensis, NBRC 14970, NRRL B-16159, Saccharothrix waywayandensis, strain LL-37Z-15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.