STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR06340.12-deoxy-D-gluconate 3-dehydrogenase. (255 aa)    
Predicted Functional Partners:
SFQ99475.1
Amino acid adenylation domain-containing protein.
  
 0.934
SFR28059.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.934
SFR29121.1
Amino acid adenylation domain-containing protein.
  
 0.934
SFR28737.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.932
SFR29119.1
Phosphopantetheine attachment site.
  
 0.891
SFR06351.1
Sugar (pentulose or hexulose) kinase.
 
 
  0.869
SFR28789.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
  
 
0.838
SFR15577.1
KduI/IolB family protein; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
 
 0.835
SFR06333.1
Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  0.831
SFR15583.1
2-deoxy-D-gluconate 3-dehydrogenase.
  
  
 
0.831
Your Current Organism:
Lentzea waywayandensis
NCBI taxonomy Id: 84724
Other names: ATCC 51594, DSM 44232, IFO 14970, JCM 9114, L. waywayandensis, NBRC 14970, NRRL B-16159, Saccharothrix waywayandensis, strain LL-37Z-15
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