STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR20660.1AraC-type DNA-binding protein. (336 aa)    
Predicted Functional Partners:
SFR20805.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.762
SFR30010.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.632
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.607
SFR28198.1
Signal transduction histidine kinase.
    
 0.605
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.547
SFR02673.1
AraC-type DNA-binding protein.
  
     0.499
SFR20663.1
Electron transfer DM13.
       0.471
SFR20658.1
Short chain enoyl-CoA hydratase.
  
     0.468
SFR09617.1
DNA-binding transcriptional regulator, AcrR family.
  
     0.438
carA
Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family.
    
  0.414
Your Current Organism:
Lentzea waywayandensis
NCBI taxonomy Id: 84724
Other names: ATCC 51594, DSM 44232, IFO 14970, JCM 9114, L. waywayandensis, NBRC 14970, NRRL B-16159, Saccharothrix waywayandensis, strain LL-37Z-15
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