STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR21022.1Phytoene desaturase. (473 aa)    
Predicted Functional Partners:
SFR04310.1
Phytoene synthase.
 
 0.983
SFR23822.1
Phytoene synthase.
 
 0.982
SFR25447.1
Lycopene beta-cyclase.
 
 
 0.924
SFR02445.1
Lycopene beta-cyclase.
 
 
 0.893
SFR04343.1
Isorenieratene synthase.
 
  
 0.838
SFR04356.1
Lycopene cyclase domain-containing protein.
 
  
 0.790
SFR04338.1
Flavin containing amine oxidoreductase.
  
  
 
0.733
SFR21020.1
Protein of unknown function.
       0.714
SFR23818.1
Geranylgeranyl diphosphate synthase, type I; Belongs to the FPP/GGPP synthase family.
 
 
 0.627
SFR20658.1
Short chain enoyl-CoA hydratase.
   
 
  0.613
Your Current Organism:
Lentzea waywayandensis
NCBI taxonomy Id: 84724
Other names: ATCC 51594, DSM 44232, IFO 14970, JCM 9114, L. waywayandensis, NBRC 14970, NRRL B-16159, Saccharothrix waywayandensis, strain LL-37Z-15
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