STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR21417.1Uncharacterized conserved protein YcaQ, contains winged helix DNA-binding domain. (363 aa)    
Predicted Functional Partners:
SFR21416.1
Epoxide hydrolase.
       0.777
SFR21414.1
DNA-binding transcriptional regulator, FadR family.
       0.608
SFR27725.1
Transcriptional regulator PadR-like family protein.
  
     0.454
SFR11451.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.453
SFR15784.1
Regulatory protein, tetR family.
  
     0.452
SFR24840.1
DNA-binding transcriptional regulator, AcrR family.
  
     0.444
SFR28161.1
Regulatory protein, tetR family.
  
     0.438
SFR21412.1
MFS transporter, CP family, cyanate transporter.
       0.433
SFR27535.1
Regulatory protein, tetR family.
  
     0.423
SFR20714.1
Regulatory protein, luxR family.
  
     0.418
Your Current Organism:
Lentzea waywayandensis
NCBI taxonomy Id: 84724
Other names: ATCC 51594, DSM 44232, IFO 14970, JCM 9114, L. waywayandensis, NBRC 14970, NRRL B-16159, Saccharothrix waywayandensis, strain LL-37Z-15
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