STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR22384.1Hypothetical protein. (489 aa)    
Predicted Functional Partners:
SFR22388.1
YbaB/EbfC DNA-binding family protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
 
     0.951
SFR22380.1
Hypothetical protein.
       0.807
SFR28450.1
alpha-L-fucosidase.
  
     0.760
SFQ96680.1
Carbohydrate binding module (family 35).
  
     0.755
SFR28372.1
Hypothetical protein.
  
     0.734
SFR02684.1
Helix-turn-helix domain-containing protein.
  
     0.725
SFR10859.1
Hypothetical protein.
  
     0.717
SFR08781.1
Hypothetical protein.
 
     0.681
SFR22648.1
Hypothetical protein.
  
     0.671
SFR23560.1
RHS repeat-associated core domain-containing protein.
 
     0.637
Your Current Organism:
Lentzea waywayandensis
NCBI taxonomy Id: 84724
Other names: ATCC 51594, DSM 44232, IFO 14970, JCM 9114, L. waywayandensis, NBRC 14970, NRRL B-16159, Saccharothrix waywayandensis, strain LL-37Z-15
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