STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR23610.1Hypothetical protein. (194 aa)    
Predicted Functional Partners:
SFR23612.1
Hypothetical protein.
 
     0.924
SFR23608.1
tRNA-splicing ligase RtcB.
       0.577
SFQ96095.1
Methanogenic corrinoid protein MtbC1.
  
     0.576
SFR23606.1
Hypothetical protein.
       0.561
SFR23603.1
ABC-2 type transport system ATP-binding protein.
       0.537
SFR23604.1
ABC transporter efflux protein, DrrB family.
       0.537
SFR11411.1
Chitin-binding protein.
  
     0.507
SFR29619.1
Chitin-binding protein.
  
     0.462
SFQ96090.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
     0.445
SFR24353.1
Acetyltransferase (GNAT) domain-containing protein.
  
     0.422
Your Current Organism:
Lentzea waywayandensis
NCBI taxonomy Id: 84724
Other names: ATCC 51594, DSM 44232, IFO 14970, JCM 9114, L. waywayandensis, NBRC 14970, NRRL B-16159, Saccharothrix waywayandensis, strain LL-37Z-15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.