STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR28824.1Ribosomal protein S18 acetylase RimI. (135 aa)    
Predicted Functional Partners:
SFR28985.1
Urease subunit gamma/beta.
  
 
  0.621
SFR26056.1
Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
    0.598
SFR28823.1
Hypothetical protein.
       0.559
SFR09158.1
tRNA threonylcarbamoyl adenosine modification protein YeaZ.
  
 0.521
SFR04375.1
Hypothetical protein.
  
     0.502
SFR27618.1
Hypothetical protein.
  
     0.439
tsaD
N6-L-threonylcarbamoyladenine synthase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
 
 0.436
SFR21966.1
Hypothetical protein.
  
     0.436
SFR25365.1
Hypothetical protein.
  
     0.430
SFR09141.1
tRNA threonylcarbamoyladenosine biosynthesis protein TsaE.
  
 
 0.428
Your Current Organism:
Lentzea waywayandensis
NCBI taxonomy Id: 84724
Other names: ATCC 51594, DSM 44232, IFO 14970, JCM 9114, L. waywayandensis, NBRC 14970, NRRL B-16159, Saccharothrix waywayandensis, strain LL-37Z-15
Server load: low (14%) [HD]