STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR29040.1LysM domain-containing protein. (213 aa)    
Predicted Functional Partners:
SFR00156.1
GMP synthase (glutamine-hydrolysing).
    
  0.757
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
  0.757
SFR25420.1
ABC-2 type transport system permease protein.
  
     0.614
SFR10122.1
TIGR03089 family protein.
  
     0.576
SFR09249.1
IMP dehydrogenase.
  
  
  0.539
SFR26573.1
NAD+ diphosphatase.
   
 
  0.530
SFR15461.1
Putative hydrolase/uncharacterized protein, coenzyme F420 biosynthesis associated.
  
     0.525
mshD
Mycothiol synthase; Catalyzes the transfer of acetyl from acetyl-CoA to desacetylmycothiol (Cys-GlcN-Ins) to form mycothiol.
  
     0.506
SFR29318.1
DSBA-like thioredoxin domain-containing protein.
  
     0.503
SFR09861.1
Hypothetical protein.
   
  
 0.502
Your Current Organism:
Lentzea waywayandensis
NCBI taxonomy Id: 84724
Other names: ATCC 51594, DSM 44232, IFO 14970, JCM 9114, L. waywayandensis, NBRC 14970, NRRL B-16159, Saccharothrix waywayandensis, strain LL-37Z-15
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