STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR29297.1PKD domain-containing protein. (478 aa)    
Predicted Functional Partners:
SFR29296.1
PKD domain-containing protein.
      
0.737
SFR29294.1
Alpha-mannosidase.
  
    0.541
SFR29293.1
Cellulase (glycosyl hydrolase family 5); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
       0.513
SFR29295.1
Glycosyl hydrolases family 18.
       0.513
SFR29291.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
       0.478
SFR29292.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
       0.478
SFR29290.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
       0.469
SFR29298.1
Hypothetical protein.
       0.460
Your Current Organism:
Lentzea waywayandensis
NCBI taxonomy Id: 84724
Other names: ATCC 51594, DSM 44232, IFO 14970, JCM 9114, L. waywayandensis, NBRC 14970, NRRL B-16159, Saccharothrix waywayandensis, strain LL-37Z-15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.