STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR29587.1Glucose/arabinose dehydrogenase, beta-propeller fold. (968 aa)    
Predicted Functional Partners:
SFR29589.1
NitT/TauT family transport system substrate-binding protein.
 
     0.788
SFR29588.1
NitT/TauT family transport system ATP-binding protein.
 
     0.646
SFR29590.1
NitT/TauT family transport system permease protein.
 
     0.643
SFR22616.1
Sugar lactone lactonase YvrE.
 
  
  0.566
SFR20552.1
Sugar lactone lactonase YvrE.
 
  
  0.556
SFR29585.1
Concanavalin A-like lectin/glucanases superfamily protein.
      
0.541
SFR29586.1
Glucose / Sorbosone dehydrogenase.
 
    
0.530
SFR28531.1
SMP-30/Gluconolaconase/LRE-like region-containing protein.
 
  
  0.507
SFQ99533.1
Hypothetical protein.
  
     0.488
SFR29591.1
Phytanoyl-CoA dioxygenase (PhyH).
 
     0.464
Your Current Organism:
Lentzea waywayandensis
NCBI taxonomy Id: 84724
Other names: ATCC 51594, DSM 44232, IFO 14970, JCM 9114, L. waywayandensis, NBRC 14970, NRRL B-16159, Saccharothrix waywayandensis, strain LL-37Z-15
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