STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UVSSAUV stimulated scaffold protein A. (747 aa)    
Predicted Functional Partners:
USP7
Ubiquitin carboxyl-terminal hydrolase 7.
    
 0.988
ERCC8
ERCC excision repair 8, CSA ubiquitin ligase complex subunit.
    
 
 0.957
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 
 0.902
GTF2H1
Transcription initiation factor TFIIH subunit 1.
    
 
 0.877
ERCC6
ERCC excision repair 6, chromatin remodeling factor.
    
 
 0.872
USP40
Ubiquitin carboxyl-terminal hydrolase 40.
    
 0.836
DDB1
Damage specific DNA binding protein 1.
    
 
 0.779
WDR61
WD repeat-containing protein 61.
    
 
 0.713
POLR2A
DNA-directed RNA polymerase II subunit RPB1.
   
 
 0.700
POLR2F
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
    
 
 0.664
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.