Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SMCHD1Structural maintenance of chromosomes flexible hinge domain-containing protein 1. (1990 aa)    
Predicted Functional Partners:
METTL4
N(6)-adenine-specific DNA methyltransferase.
   
  
 0.910
MVB12A
Multivesicular body subunit 12A.
    
   0.872
MACROH2A2
Core histone macro-H2A.2.
    
 
 0.810
LRIF1
Ligand dependent nuclear receptor interacting factor 1.
    
 
 0.795
NUDCD1
NudC domain containing 1.
    
   0.787
PDS5A
Sister chromatid cohesion protein PDS5.
   
  
 0.745
MACROH2A1
Core histone macro-H2A.1.
    
 
 0.681
NUP133
Nuclear pore complex protein Nup133.
   
  
 0.642
NARS2
Asparaginyl-tRNA synthetase 2, mitochondrial (putative).
    
   0.641
ENSCPBP00000036866
annotation not available
      
 0.628
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
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