STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBDC1Polysaccharide biosynthesis domain containing 1. (140 aa)    
Predicted Functional Partners:
MYSM1
Myb like, SWIRM and MPN domains 1.
   
 
 0.723
TTLL12
Tubulin--tyrosine ligase-like protein 12.
    
   0.615
BCKDHB
2-oxoisovalerate dehydrogenase E1 component beta subunit.
      
 0.576
ZDHHC24
Zinc finger DHHC-type containing 24.
      
 0.575
PDCD5
Programmed cell death protein 5.
   
    0.509
C2orf76
Chromosome 2 open reading frame 76.
   
  
 0.482
PFDN2
Prefoldin subunit 2.
   
    0.420
FCF1
U3 small nucleolar RNA-associated protein 24.
   
    0.418
POLR2H
RNA polymerase II subunit H.
   
   0.405
LRRC42
Leucine rich repeat containing 42.
      
 0.403
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.