STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBE2UUbiquitin conjugating enzyme E2 U (putative). (320 aa)    
Predicted Functional Partners:
ENSCPBP00000021729
Ubiquitin-conjugating enzyme E2 variant 1.
   
 0.991
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.964
RAD18
RAD18, E3 ubiquitin protein ligase.
    
 0.941
RPS27A
Ubiquitin-small subunit ribosomal protein S27Ae.
   
 0.880
TRIP12
Thyroid hormone receptor interactor 12.
   
 0.859
RNF20
E3 ubiquitin-protein ligase BRE1.
    
 0.820
RNF40
E3 ubiquitin-protein ligase BRE1.
    
 0.820
PCNA
Proliferating cell nuclear antigen.
   
 0.818
UBA1
Ubiquitin like modifier activating enzyme 1.
   
 0.800
UBA7
Ubiquitin like modifier activating enzyme 7.
   
 0.800
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.