STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL15A1Collagen type XV alpha 1 chain. (339 aa)    
Predicted Functional Partners:
MMP9
Matrix metalloproteinase-9 (gelatinase B).
   
 0.589
MMP13
Matrix metalloproteinase-13 (collagenase 3).
    
 0.497
ENSCPBP00000039890
annotation not available
    
 0.497
PLOD1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
   
 0.444
MMP2
Matrix metalloproteinase-2 (gelatinase A).
   
 0.427
NCL
Nucleolin.
    
 
 0.427
ENSCPBP00000039865
Matrix metalloproteinase-3 (stromelysin 1, progelatinase).
   
 0.427
COL6A2
Collagen type VI alpha 2 chain.
 
 
 0.419
SERPINH1
Serpin peptidase inhibitor, clade H, member 1.
   
 
 0.409
CTSB
Cathepsin B.
     
 0.405
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.