Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFCC1EF-hand and coiled-coil domain containing 1. (647 aa)    
Predicted Functional Partners:
PET100
Protein PET100, animal type.
      
 0.614
NCAN
Neurocan core protein.
      
 0.607
ERMN
Ermin.
      
 0.607
TRPC1
Transient receptor potential cation channel subfamily C member 1.
      
 0.593
ENSCPBP00000010497
annotation not available
      
 0.590
PFDN4
Prefoldin subunit 4.
      
 0.572
LYPD6
LY6/PLAUR domain containing 6.
      
 0.572
FKBP9
FK506-binding protein 9/10.
      
 0.566
KCNG2
Potassium voltage-gated channel modifier subfamily G member 2.
      
 0.559
EFCAB11
EF-hand calcium binding domain 11.
      
 0.512
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
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