STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APLFAprataxin and PNKP like factor. (554 aa)    
Predicted Functional Partners:
XRCC1
X-ray repair cross complementing 1.
    
 
 0.974
LIG3
DNA ligase 3.
    
 
 0.973
PARP1
Poly [ADP-ribose] polymerase 1.
    
 
 0.966
LIG4
DNA ligase 4.
    
 
 0.966
XRCC6
ATP-dependent DNA helicase 2 subunit 1.
    
 
 0.965
XRCC5
ATP-dependent DNA helicase 2 subunit 2.
    
 
 0.955
ENSCPBP00000006613
annotation not available
    
 
 0.954
TDP1
Tyrosyl-DNA phosphodiesterase 1.
    
 
 0.950
CHD1L
Chromodomain helicase DNA binding protein 1 like.
    
 
 0.936
MACROH2A1
Core histone macro-H2A.1.
    
 
 0.914
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.