STXBP1 protein (Chrysemys picta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

STXBP1

Syntaxin binding protein 1. (603 aa)

Predicted Functional Partners:

RIMS2

0.959

SNAP25

0.682

APBA1

0.657

CASK

0.605

APBA2

0.601

ENSCPBP00000008860

0.576

STX11

0.570

STX3

0.551

STX1B

0.551

STX4

0.551

Your Current Organism:

Chrysemys picta

NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APBA1	CASK	ENSCPBP00000036457	ENSCPBP00000028168	Amyloid beta A4 precursor protein-binding family A member 1.	Calcium/calmodulin dependent serine protein kinase.	0.997
APBA1	ENSCPBP00000008860	ENSCPBP00000036457	ENSCPBP00000008860	Amyloid beta A4 precursor protein-binding family A member 1.	Synaptosomal-associated protein 25-like.	0.487
APBA1	RIMS2	ENSCPBP00000036457	ENSCPBP00000037592	Amyloid beta A4 precursor protein-binding family A member 1.	Regulating synaptic membrane exocytosis 2.	0.953
APBA1	SNAP25	ENSCPBP00000036457	ENSCPBP00000033362	Amyloid beta A4 precursor protein-binding family A member 1.	Synaptosomal-associated protein 25.	0.601
APBA1	STX11	ENSCPBP00000036457	ENSCPBP00000024065	Amyloid beta A4 precursor protein-binding family A member 1.	Syntaxin 11.	0.504
APBA1	STX1B	ENSCPBP00000036457	ENSCPBP00000013108	Amyloid beta A4 precursor protein-binding family A member 1.	Syntaxin 1B.	0.643
APBA1	STX3	ENSCPBP00000036457	ENSCPBP00000012696	Amyloid beta A4 precursor protein-binding family A member 1.	Syntaxin 3.	0.643
APBA1	STX4	ENSCPBP00000036457	ENSCPBP00000013116	Amyloid beta A4 precursor protein-binding family A member 1.	Syntaxin 4.	0.643
APBA1	STXBP1	ENSCPBP00000036457	ENSCPBP00000001391	Amyloid beta A4 precursor protein-binding family A member 1.	Syntaxin binding protein 1.	0.657
APBA2	CASK	ENSCPBP00000014685	ENSCPBP00000028168	Amyloid beta A4 precursor protein-binding family A member 2.	Calcium/calmodulin dependent serine protein kinase.	0.994
APBA2	ENSCPBP00000008860	ENSCPBP00000014685	ENSCPBP00000008860	Amyloid beta A4 precursor protein-binding family A member 2.	Synaptosomal-associated protein 25-like.	0.487
APBA2	RIMS2	ENSCPBP00000014685	ENSCPBP00000037592	Amyloid beta A4 precursor protein-binding family A member 2.	Regulating synaptic membrane exocytosis 2.	0.953
APBA2	SNAP25	ENSCPBP00000014685	ENSCPBP00000033362	Amyloid beta A4 precursor protein-binding family A member 2.	Synaptosomal-associated protein 25.	0.599
APBA2	STX11	ENSCPBP00000014685	ENSCPBP00000024065	Amyloid beta A4 precursor protein-binding family A member 2.	Syntaxin 11.	0.504
APBA2	STX1B	ENSCPBP00000014685	ENSCPBP00000013108	Amyloid beta A4 precursor protein-binding family A member 2.	Syntaxin 1B.	0.592
APBA2	STX3	ENSCPBP00000014685	ENSCPBP00000012696	Amyloid beta A4 precursor protein-binding family A member 2.	Syntaxin 3.	0.592
APBA2	STX4	ENSCPBP00000014685	ENSCPBP00000013116	Amyloid beta A4 precursor protein-binding family A member 2.	Syntaxin 4.	0.592
APBA2	STXBP1	ENSCPBP00000014685	ENSCPBP00000001391	Amyloid beta A4 precursor protein-binding family A member 2.	Syntaxin binding protein 1.	0.601
CASK	APBA1	ENSCPBP00000028168	ENSCPBP00000036457	Calcium/calmodulin dependent serine protein kinase.	Amyloid beta A4 precursor protein-binding family A member 1.	0.997
CASK	APBA2	ENSCPBP00000028168	ENSCPBP00000014685	Calcium/calmodulin dependent serine protein kinase.	Amyloid beta A4 precursor protein-binding family A member 2.	0.994