STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMARCA1SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1. (1059 aa)    
Predicted Functional Partners:
BAZ1A
Bromodomain adjacent to zinc finger domain protein 1A.
    
 0.950
CECR2
Cat eye syndrome chromosome region, candidate 2.
    
 0.895
BAZ1B
Bromodomain adjacent to zinc finger domain protein 1B.
   
 0.891
RSF1
Remodeling and spacing factor 1.
   
 0.875
BPTF
Bromodomain PHD finger transcription factor.
   
 
 0.873
CHRAC1
Chromatin accessibility complex protein 1.
    
 
 0.831
RBBP4
RB binding protein 4, chromatin remodeling factor.
   
 0.821
RBBP7
RB binding protein 7, chromatin remodeling factor.
   
 0.821
H2AZ1
Histone H2A.Z.
   
 0.778
H2AZ2
Histone H2A.V.
   
 0.778
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.