Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DDX51ATP-dependent RNA helicase DDX51/DBP6. (742 aa)    
Predicted Functional Partners:
NOL8
Nucleolar protein 8.
   
   0.885
ENSCPBP00000001186
annotation not available
   
 
 0.843
EBNA1BP2
RRNA-processing protein EBP2.
   
 0.825
NOP14
NOP14 nucleolar protein.
   
 0.789
PES1
Pescadillo ribosomal biogenesis factor 1.
   
 0.783
RSBN1
Round spermatid basic protein 1.
    
   0.740
WDR61
WD repeat-containing protein 61.
   
 0.737
GTPBP4
Nucleolar GTP-binding protein.
   
 
 0.724
FTSJ3
FtsJ RNA 2'-O-methyltransferase 3.
   
 0.715
RPL4
Large subunit ribosomal protein L4e.
   
 0.714
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
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