STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRMT2BTRNA (uracil-5-)-methyltransferase. (489 aa)    
Predicted Functional Partners:
TRMT61A
TRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit.
   
  
 0.730
TBL3
U3 small nucleolar RNA-associated protein 13.
   
    0.700
BOP1
Ribosome biogenesis protein ERB1.
   
    0.698
CEP152
Centrosomal protein CEP152.
   
    0.698
METTL1
TRNA (guanine-N7-)-methyltransferase.
  
  
 0.635
RPF2
Ribosome production factor 2 homolog.
   
  
 0.608
DDX54
ATP-dependent RNA helicase DDX54/DBP10.
  
    0.594
DUS3L
Dihydrouridine synthase 3 like.
  
  
 0.584
TRMT61B
TRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit.
   
  
 0.563
TSEN54
TRNA-splicing endonuclease subunit Sen54.
   
    0.549
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.