STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAF7E3 ubiquitin-protein ligase TRAF7. (675 aa)    
Predicted Functional Partners:
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.997
BIRC6
Baculoviral IAP repeat-containing protein 6 (apollon).
    
 0.956
ZFAND4
AN1-type zinc finger and ubiquitin domain-containing protein 1.
    
 0.942
FAU
FAU, ubiquitin like and ribosomal protein S30 fusion.
    
 0.886
ISG15
Ubiquitin cross-reactive protein.
    
 0.882
ENSCPBP00000006581
Polyubiquitin-B-like.
    
 0.882
UBL4A
Ubiquitin-like protein 4.
    
 0.882
ENSCPBP00000031962
annotation not available
    
 0.882
UBC
Ubiquitin C.
    
 0.882
ENSCPBP00000040553
annotation not available
    
 0.882
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.