STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
JMJD4Jumonji domain containing 4. (427 aa)    
Predicted Functional Partners:
ETF1
Eukaryotic translation termination factor 1.
    
 0.985
OGFOD1
2-oxoglutarate and iron dependent oxygenase domain containing 1.
      
 0.681
HSPBAP1
HSPB1 associated protein 1.
      
 0.604
ALKBH8
Alkylated DNA repair protein alkB homolog 8.
   
  
 0.596
RIOX1
Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66.
      
 0.592
KDM8
Lysine-specific demethylase 8.
      
 0.577
SNAP47
Synaptosomal-associated protein 47.
      
 0.573
PSRC1
Proline and serine rich coiled-coil 1.
      
 0.573
VPS54
Vacuolar protein sorting-associated protein 54.
      
 0.573
PREPL
Prolyl endopeptidase-like.
      
 0.569
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.