Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
PGGT1BProtein geranylgeranyltransferase type I subunit beta. (535 aa)    
Predicted Functional Partners:
FNTA
Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha.
    
 0.999
CCDC112
Coiled-coil domain containing 112.
 
    
 0.933
AMMECR1
AMMECR nuclear protein 1.
    
   0.741
AMMECR1L
AMMECR1 like.
    
   0.741
FNTB
Protein farnesyltransferase subunit beta.
    
 
 0.693
CHURC1
Churchill domain containing 1.
    
 
 0.693
HEYL
Hes related family bHLH transcription factor with YRPW motif-like.
    
 
 0.636
HEY1
Hes related family bHLH transcription factor with YRPW motif 1.
    
 
 0.636
HEY2
Hes related family bHLH transcription factor with YRPW motif 2.
    
 
 0.636
GGPS1
Geranylgeranyl diphosphate synthase, type III.
      
 0.593
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
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