STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGGT1BProtein geranylgeranyltransferase type I subunit beta. (535 aa)    
Predicted Functional Partners:
FNTA
Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha.
    
 0.998
CCDC112
Coiled-coil domain containing 112.
 
  
 
 0.906
SAMM50
SAMM50 sorting and assembly machinery component.
      
 0.572
RCE1
Ras converting CAAX endopeptidase 1.
      
 0.546
GART
annotation not available
      
 0.545
ENSCPBP00000007218
Trifunctional purine biosynthetic protein adenosine-3-like.
      
 0.545
ICMT
Protein-S-isoprenylcysteine O-methyltransferase.
      
 0.544
ZMPSTE24
Zinc metallopeptidase STE24.
      
 0.451
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.