STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPBP00000003301T-box-containing protein TBX6L. (453 aa)    
Predicted Functional Partners:
MSGN1
Mesogenin 1.
   
 0.712
MEOX1
Mesenchyme homeobox 1.
    
 
 0.587
RBPJ
Recombination signal binding protein for immunoglobulin kappa J region.
   
 0.506
WNT3A
Wingless-type MMTV integration site family, member 3.
    
 0.495
WNT3
Wingless-type MMTV integration site family, member 3.
    
 0.495
FGF8
Fibroblast growth factor 8.
      
 0.483
ATRIP
ATR interacting protein.
      
 0.470
TMEM108
Transmembrane protein 108.
      
 0.470
NHEJ1
ATP-binding cassette sub-family B member 6, mitochondrial.
      
 0.468
SFRP1
Secreted frizzled related protein 1.
      
 0.444
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
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