STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAP30Histone deacetylase complex subunit SAP30. (220 aa)    
Predicted Functional Partners:
ARID4B
AT-rich interactive domain-containing protein 4B.
    
 0.981
ARID4A
AT-rich interactive domain-containing protein 4A.
    
 0.981
SUDS3
Sin3 histone deacetylase corepressor complex component SDS3.
   
 0.862
BRMS1L
BRMS1 like transcriptional repressor.
   
 0.832
BRMS1
Breast cancer metastasis-suppressor 1 and related proteins.
   
 0.824
SAP18
Sin3A associated protein 18.
     
 0.818
SIN3B
SIN3 transcription regulator family member B.
    
 0.762
SIN3A
SIN3 transcription regulator family member A.
    
 0.762
RBBP4
RB binding protein 4, chromatin remodeling factor.
    
 0.748
RBBP7
RB binding protein 7, chromatin remodeling factor.
    
 0.748
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
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