STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SAP30Histone deacetylase complex subunit SAP30. (220 aa)    
Predicted Functional Partners:
BRMS1
Breast cancer metastasis-suppressor 1 and related proteins.
   
 0.954
SUDS3
Sin3 histone deacetylase corepressor complex component SDS3.
   
 0.951
ARID4B
AT-rich interactive domain-containing protein 4B.
    
 0.937
CIR1
Corepressor interacting with RBPJ, 1.
    
 0.918
BRMS1L
BRMS1 like transcriptional repressor.
   
 0.911
SIN3B
SIN3 transcription regulator family member B.
    
 0.910
SIN3A
SIN3 transcription regulator family member A.
    
 0.910
ARID4A
AT-rich interactive domain-containing protein 4A.
    
 0.896
SINHCAF
Family with sequence similarity 60 member A.
    
 
 0.884
SAP130
Histone deacetylase complex subunit SAP130.
    
 0.879
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
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