STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNRNP27Small nuclear ribonucleoprotein U4/U6.U5 subunit 27. (176 aa)    
Predicted Functional Partners:
USP39
U4/U6.U5 tri-snRNP-associated protein 2.
   
 0.947
SART1
Squamous cell carcinoma antigen recognized by T-cells 1.
    
 0.882
LSM7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.849
ENSCPBP00000034462
annotation not available
    
  0.825
PRPF4
U4/U6 small nuclear ribonucleoprotein PRP4.
   
  0.790
SNRPE
Small nuclear ribonucleoprotein polypeptide E.
   
 0.788
LSM5
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
  0.783
LSM4
LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.781
SNRNP40
Small nuclear ribonucleoprotein U5 subunit 40.
   
  0.779
SNRPG
Small nuclear ribonucleoprotein polypeptide G.
   
 0.770
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.