STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NID1Nidogen (entactin). (1253 aa)    
Predicted Functional Partners:
HSPG2
Heparan sulfate proteoglycan 2.
   
 0.814
AGRN
Agrin.
   
 0.692
LAMA4
Laminin subunit alpha 4.
   
 0.643
MMP19
Matrix metalloproteinase-19 (RASI).
     
 0.612
ENSCPBP00000004237
annotation not available
   
 0.594
LAMC1
Laminin subunit gamma 1.
   
 0.594
LAMC3
Laminin subunit gamma 3.
   
 0.594
EGFLAM
EGF like, fibronectin type III and laminin G domains.
   
 0.582
LAMA2
Laminin subunit alpha 2.
   
 0.509
ENSCPBP00000025940
annotation not available
   
 0.509
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.