STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSL1D1Ribosome biogenesis protein UTP30. (374 aa)    
Predicted Functional Partners:
DDX18
ATP-dependent RNA helicase DDX18/HAS1.
   
 
 0.999
NIFK
Nucleolar protein interacting with the FHA domain of MKI67.
   
 
 0.999
NOP53
Glioma tumor suppressor candidate region gene 2.
   
 
 0.997
EBNA1BP2
RRNA-processing protein EBP2.
   
 
 0.996
RRP1B
Ribosomal RNA-processing protein 1.
   
 
 0.996
BRIX1
Ribosome biogenesis protein BRX1.
   
 
 0.996
RPF2
Ribosome production factor 2 homolog.
   
 
 0.995
BYSL
Essential nuclear protein 1.
   
 
 0.995
WDR12
Ribosome biogenesis protein.
   
 
 0.994
NOC2L
NOC2 like nucleolar associated transcriptional repressor.
   
 
 0.994
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.