STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPBP00000006104Collagen type V/XI/XXIV/XXVII, alpha. (251 aa)    
Predicted Functional Partners:
COL11A1
Collagen type V/XI/XXIV/XXVII, alpha.
 
      0.898
COL25A1
Collagen type XXV alpha 1 chain.
 
  
  0.806
COL9A2
Collagen type IX alpha 2 chain.
 
  
  0.788
COL13A1
Collagen type XIII alpha 1 chain.
 
  
  0.718
COL9A3
Collagen type IX alpha 3 chain.
 
  
  0.697
COL10A1
Collagen type X alpha 1 chain.
 
  
  0.695
COL8A1
Collagen type VIII alpha 1 chain.
 
 
 
 0.688
COL1A2
Collagen type I alpha 2 chain.
 
      0.534
COL4A4
Collagen type IV alpha 4 chain.
 
  
  0.420
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.