STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HERC6HECT and RLD domain containing E3 ubiquitin protein ligase family member 6. (1060 aa)    
Predicted Functional Partners:
TRIP12
Thyroid hormone receptor interactor 12.
   
 
0.700
ISG15
Ubiquitin cross-reactive protein.
   
 0.678
UBE2L5
Ubiquitin conjugating enzyme E2 L3.
   
 0.516
UBE2L6
Ubiquitin conjugating enzyme E2 L6.
   
 0.516
ENSCPBP00000006581
Polyubiquitin-B-like.
   
 0.480
PSMD4
26S proteasome regulatory subunit N10.
    
 
 0.475
IFIH1
Interferon-induced helicase C domain-containing protein 1.
   
 
 0.472
UBE2N
Ubiquitin conjugating enzyme E2 N.
    
 0.457
UBA3
Ubiquitin like modifier activating enzyme 3.
   
 0.444
ATG7
Ubiquitin-like modifier-activating enzyme ATG7.
   
 0.436
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.