APBB1 protein (Chrysemys picta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

APBB1

Amyloid beta precursor protein binding family B member 1. (442 aa)

Predicted Functional Partners:

ENSCPBP00000038828

0.660

ENSCPBP00000038847

0.660

MAPK10

0.540

MAPK8

0.540

MRE11

0.531

RAD50

0.498

APLP2

0.497

GAK

0.485

NBN

0.484

APLP1

0.482

Your Current Organism:

Chrysemys picta

NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APBB1	APLP1	ENSCPBP00000008167	ENSCPBP00000000485	Amyloid beta precursor protein binding family B member 1.	Amyloid beta precursor like protein 1.	0.482
APBB1	APLP2	ENSCPBP00000008167	ENSCPBP00000038979	Amyloid beta precursor protein binding family B member 1.	Amyloid beta precursor like protein 2.	0.497
APBB1	ENSCPBP00000038828	ENSCPBP00000008167	ENSCPBP00000038828	Amyloid beta precursor protein binding family B member 1.	Amyloid beta A4 protein.	0.660
APBB1	ENSCPBP00000038847	ENSCPBP00000008167	ENSCPBP00000038847	Amyloid beta precursor protein binding family B member 1.	Amyloid beta A4 protein-like.	0.660
APBB1	GAK	ENSCPBP00000008167	ENSCPBP00000030747	Amyloid beta precursor protein binding family B member 1.	Cyclin G associated kinase.	0.485
APBB1	MAPK10	ENSCPBP00000008167	ENSCPBP00000006922	Amyloid beta precursor protein binding family B member 1.	Mitogen-activated protein kinase 8/9/10 (c-Jun N-terminal kinase).	0.540
APBB1	MAPK8	ENSCPBP00000008167	ENSCPBP00000017447	Amyloid beta precursor protein binding family B member 1.	Mitogen-activated protein kinase 8/9/10 (c-Jun N-terminal kinase).	0.540
APBB1	MRE11	ENSCPBP00000008167	ENSCPBP00000034448	Amyloid beta precursor protein binding family B member 1.	MRE11 homolog, double strand break repair nuclease.	0.531
APBB1	NBN	ENSCPBP00000008167	ENSCPBP00000012525	Amyloid beta precursor protein binding family B member 1.	Nibrin.	0.484
APBB1	RAD50	ENSCPBP00000008167	ENSCPBP00000023068	Amyloid beta precursor protein binding family B member 1.	RAD50 double strand break repair protein.	0.498
APLP1	APBB1	ENSCPBP00000000485	ENSCPBP00000008167	Amyloid beta precursor like protein 1.	Amyloid beta precursor protein binding family B member 1.	0.482
APLP2	APBB1	ENSCPBP00000038979	ENSCPBP00000008167	Amyloid beta precursor like protein 2.	Amyloid beta precursor protein binding family B member 1.	0.497
APLP2	ENSCPBP00000038828	ENSCPBP00000038979	ENSCPBP00000038828	Amyloid beta precursor like protein 2.	Amyloid beta A4 protein.	0.501
APLP2	ENSCPBP00000038847	ENSCPBP00000038979	ENSCPBP00000038847	Amyloid beta precursor like protein 2.	Amyloid beta A4 protein-like.	0.494
ENSCPBP00000038828	APBB1	ENSCPBP00000038828	ENSCPBP00000008167	Amyloid beta A4 protein.	Amyloid beta precursor protein binding family B member 1.	0.660
ENSCPBP00000038828	APLP2	ENSCPBP00000038828	ENSCPBP00000038979	Amyloid beta A4 protein.	Amyloid beta precursor like protein 2.	0.501
ENSCPBP00000038828	ENSCPBP00000038847	ENSCPBP00000038828	ENSCPBP00000038847	Amyloid beta A4 protein.	Amyloid beta A4 protein-like.	0.773
ENSCPBP00000038847	APBB1	ENSCPBP00000038847	ENSCPBP00000008167	Amyloid beta A4 protein-like.	Amyloid beta precursor protein binding family B member 1.	0.660
ENSCPBP00000038847	APLP2	ENSCPBP00000038847	ENSCPBP00000038979	Amyloid beta A4 protein-like.	Amyloid beta precursor like protein 2.	0.494
ENSCPBP00000038847	ENSCPBP00000038828	ENSCPBP00000038847	ENSCPBP00000038828	Amyloid beta A4 protein-like.	Amyloid beta A4 protein.	0.773