STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALKBH6Alkylated DNA repair protein alkB homolog 6. (246 aa)    
Predicted Functional Partners:
MED29
Mediator of RNA polymerase II transcription subunit 29.
    
 
 0.780
ALKBH7
Synovial sarcoma, X breakpoint 2 interacting protein.
   
  
 0.711
ALKBH4
alkB homolog 4, lysine demethylase.
      
 0.585
ALKBH1
Alkylated DNA repair protein alkB homolog 1.
   
  
 0.582
RSU1
Ras suppressor protein 1.
      
 0.581
VPS51
Vacuolar protein sorting-associated protein 51.
      
 0.569
JMJD4
Jumonji domain containing 4.
      
 0.549
ALKBH2
AlkB homolog 2, alpha-ketoglutarate dependent dioxygenase.
      
 0.543
DHX30
ATP-dependent RNA helicase DHX30.
      
 0.457
BRD7
Bromodomain containing 7.
      
 0.449
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.