STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PLAAPhospholipase A-2-activating protein. (863 aa)    
Predicted Functional Partners:
UFD1
Ubiquitin fusion degradation 1 like (yeast).
   
 
 0.989
YOD1
Ubiquitin thioesterase OTU1.
    
 
 0.987
NPLOC4
Nuclear protein localization protein 4 homolog.
   
 
 0.930
FAAP100
Fanconi anemia core complex associated protein 100.
   
 
 0.930
UBXN2B
UBX domain-containing protein 2B.
    
 
 0.912
NSFL1C
UBX domain-containing protein 1.
    
 
 0.912
FAF1
FAS-associated factor 1.
   
 
 0.877
FAF2
Fas associated factor family member 2.
   
 
 0.875
RPS27A
Ubiquitin-small subunit ribosomal protein S27Ae.
    
 0.873
VCP
Transitional endoplasmic reticulum ATPase.
   
 
 0.867
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
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