STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBM8ARNA binding motif protein 8A. (217 aa)    
Predicted Functional Partners:
MAGOH
Mago homolog, exon junction complex core component.
   
 0.998
EIF4A3
Eukaryotic translation initiation factor 4A3.
   
 0.994
CASC3
Cancer susceptibility candidate 3.
   
 0.993
UPF2
UPF2 regulator of nonsense transcripts homolog (yeast).
    
 0.993
UPF1
Regulator of nonsense transcripts 1.
    
 0.990
RNPS1
RNA binding protein with serine rich domain 1.
   
 0.987
SRSF3
Serine and arginine rich splicing factor 3.
   
 0.985
SRSF1
Serine and arginine rich splicing factor 1.
   
 0.982
PYM1
PYM homolog 1, exon junction complex associated factor.
    
 0.978
SMG7
SMG7, nonsense mediated mRNA decay factor.
    
 0.969
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.