STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF4BSerine/threonine-protein kinase PRP4. (236 aa)    
Predicted Functional Partners:
ENSCPBP00000011937
annotation not available
 
      0.900
PRPF6
Pre-mRNA processing factor 6.
    
 
 0.872
PRPF8
Pre-mRNA processing factor 8.
    
 
 0.797
EFTUD2
116 kDa U5 small nuclear ribonucleoprotein component.
    
 
 0.793
PRPF31
U4/U6 small nuclear ribonucleoprotein PRP31.
    
 
 0.770
SF3B1
Splicing factor 3B subunit 1.
   
 
 0.767
RBM25
RNA binding motif protein 25.
   
  0.759
TCERG1
Transcription elongation regulator 1.
   
 0.739
PRPF4
U4/U6 small nuclear ribonucleoprotein PRP4.
    
 
 0.730
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
    
 
 0.729
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.