STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPIHPeptidyl-prolyl isomerase H (cyclophilin H). (151 aa)    
Predicted Functional Partners:
PRPF3
U4/U6 small nuclear ribonucleoprotein PRP3.
   
 0.997
PRPF4
U4/U6 small nuclear ribonucleoprotein PRP4.
    
 0.997
PRPF31
U4/U6 small nuclear ribonucleoprotein PRP31.
    
 0.990
SNU13
SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5).
  
 0.990
SNRPD1
Small nuclear ribonucleoprotein D1 polypeptide.
   
 0.888
WBP4
WW domain binding protein 4.
    
 0.875
LSM4
LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.860
EFTUD2
116 kDa U5 small nuclear ribonucleoprotein component.
   
 0.844
RPP38
Ribonucleases P/MRP protein subunit RPP38.
  
 0.842
PRPF8
Pre-mRNA processing factor 8.
   
 0.840
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.