STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RTCBTRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase). (505 aa)    
Predicted Functional Partners:
DDX1
DEAD-box helicase 1.
   
 0.972
ZBTB8OS
Zinc finger and BTB domain containing 8 opposite strand.
 
 0.965
RTRAF
Chromosome unknown open reading frame, human C14orf166.
   
 0.936
FAM98B
Family with sequence similarity 98 member B.
    
 0.918
C2orf49
Chromosome 1 open reading frame, human C2orf49.
    
 0.908
RTCA
RNA 3'-terminal phosphate cyclase (ATP).
  
  
 0.866
MCC
Mutated in colorectal cancers.
  
  
 0.753
RCL1
RNA 3'-terminal phosphate cyclase-like protein.
  
  
 0.753
EIF2S1
Eukaryotic translation initiation factor 2 subunit alpha.
   
  
 0.751
MRPL58
Mitochondrial ribosomal protein L58.
  
  
 0.718
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.