STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PUS1TRNA pseudouridine38-40 synthase. (352 aa)    
Predicted Functional Partners:
WDR4
TRNA (guanine-N(7)-)-methyltransferase subunit TRM82.
   
 
 0.923
TRUB1
TruB pseudouridine synthase family member 1.
   
 0.862
DKC1
H/ACA ribonucleoprotein complex subunit 4.
   
 0.861
MRPL17
Large subunit ribosomal protein L17.
  
  
 0.814
DUS3L
Dihydrouridine synthase 3 like.
  
 
 0.786
TRUB2
Mitochondrial mRNA pseudouridine synthase TRUB2.
   
 0.768
PUS7
Pseudouridylate synthase 7 (putative).
   
 
 0.754
METTL1
TRNA (guanine-N7-)-methyltransferase.
  
 
 0.751
DDX18
ATP-dependent RNA helicase DDX18/HAS1.
  
  
 0.733
WDR12
Ribosome biogenesis protein.
   
   0.725
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.