STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCFD2Sec1 family domain containing 2. (683 aa)    
Predicted Functional Partners:
RINT1
RAD50-interacting protein 1.
   
 
 0.820
STX18
Syntaxin 18.
    
 
 0.815
NBAS
Neuroblastoma amplified sequence.
    
 
 0.802
ENSCPBP00000005130
Centromere/kinetochore protein zw10 homolog.
    
 
 0.742
ZW10
Protein transport protein DSL1/ZW10.
    
 
 0.742
SCFD1
Sec1 family domain-containing protein 1.
    
 
 0.644
USE1
Unconventional SNARE in the ER 1.
   
   0.605
SEC22B
SEC22 homolog B, vesicle trafficking protein.
   
   0.536
NAPG
Gamma-soluble NSF attachment protein.
    
   0.534
C19orf25
Chromosome 19 open reading frame 25.
    
   0.407
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.