STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP38Ubiquitin carboxyl-terminal hydrolase 35/38. (1043 aa)    
Predicted Functional Partners:
WDR48
WD repeat-containing protein 48.
   
 0.847
RPS27A
Ubiquitin-small subunit ribosomal protein S27Ae.
    
  0.797
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.762
DMWD
Dystrophia myotonica, WD repeat containing.
   
 0.756
WDR20
WD repeat domain 20.
   
 0.756
UBC
Ubiquitin C.
    
 0.704
ENSCPBP00000031962
annotation not available
    
 0.621
PCNA
Proliferating cell nuclear antigen.
   
  0.594
FANCM
Fanconi anemia complementation group M.
     
 0.586
FANCI
Fanconi anemia complementation group I.
   
 0.582
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.