STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM16Tripartite motif-containing protein 16. (576 aa)    
Predicted Functional Partners:
SKP1
S-phase kinase associated protein 1.
    
 0.850
RBX1
RING-box protein 1.
    
 0.832
CUL1
Cullin 1.
    
 0.785
CUL3
Cullin 3.
    
 0.727
CDC6
Cell division control protein 6.
    
 0.620
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.619
MRPL2
Large subunit ribosomal protein L2.
    
 0.609
CDC34
Ubiquitin-conjugating enzyme E2 R.
    
 0.594
NEDD8
Neural precursor cell expressed, developmentally down-regulated 8.
    
 0.588
UBA3
Ubiquitin like modifier activating enzyme 3.
   
 0.586
Your Current Organism:
Chrysemys picta
NCBI taxonomy Id: 8478
Other names: C. picta bellii, Chrysemys picta bellii, Chrysemys picta subsp. bellii, western painted turtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.