STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM7.2Zinc finger protein RFP isoform B. (472 aa)    
Predicted Functional Partners:
BRD3
Bromodomain-containing protein 3 isoform B.
    
 
 0.681
KIFC1
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
 
 0.670
CSNK2B
Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.
    
 
 0.670
ABHD16A
Abhydrolase domain-containing protein 16A.
    
 
 0.669
CENPA
Histone H3-like centromeric protein A.
    
 0.547
44G24.1
Histone H2B.3; Belongs to the histone H2B family.
    
 0.489
TAP2
Antigen peptide transporter 2.
   
 
 0.477
TAPBP
Tapasin.
   
 
 0.476
HPRT1
Hypoxanthine-guanine phosphoribosyltransferase.
      
 0.467
INPP5J
Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A isoform A.
      
 0.457
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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