STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CFAP54Cilia-and flagella-associated protein 54 isoform A. (3174 aa)    
Predicted Functional Partners:
TMEM212
Transmembrane protein 212.
   
  
 0.929
SPEF2
Sperm flagellar protein 2 isoform A.
   
 
 0.610
LRGUK
Leucine-rich repeat and guanylate kinase domain-containing protein isoform B.
    
 
 0.535
RCL1
RNA 3'-terminal phosphate cyclase-like protein.
      
 0.507
WDPCP
WD repeat-containing and planar cell polarity effector fritz-like protein.
   
    0.503
TBX10
T-box transcription factor TBX10.
   
  
 0.469
TBX1
T-box transcription factor TBX1.
   
  
 0.469
CFAP221
Cilia-and flagella-associated protein 221.
    
 
 0.440
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.