STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMIETransmembrane inner ear expressed protein isoform B. (233 aa)    
Predicted Functional Partners:
CIB2
Calcium and integrin-binding family member 2.
     
 0.745
CIB3
Calcium and integrin-binding family member 3.
     
 0.514
TMC3L
Transmembrane channel-like protein.
     
 0.474
TMC3
Transmembrane channel-like protein.
     
 0.474
Y1Q_0017837
Uncharacterized protein.
     
 0.429
LHFPL5
Tetraspan membrane protein of hair cell stereocilia.
     
 0.429
LHFPL4
Lipoma HMGIC fusion partner-like protein 4.
     
 0.429
Y1Q_0023360
Uncharacterized protein.
     
 0.429
LHFPL3
Lipoma HMGIC fusion partner-like 3 protein.
     
 0.429
TMC2
Transmembrane channel-like protein.
     
 0.413
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.