STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PARK2LRBR-type E3 ubiquitin transferase. (180 aa)    
Predicted Functional Partners:
PINK1
Serine/threonine-protein kinase PINK1, mitochondrial; Belongs to the arginase family.
    
 0.948
UBE2V1
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.943
PARK2
E3 ubiquitin-protein ligase parkin isoform A.
 
     0.926
SCARB1
Scavenger receptor class B member 1 isoform A.
    
 0.907
KXD1
KxDL motif-containing protein 1.
    
 0.907
UBE2L3
Ubiquitin-conjugating enzyme E2 L3; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.905
RPS27A
Ubiquitin-40S ribosomal protein S27a.
    
 0.900
SNCAIP
Synphilin-1.
    
 0.869
PARK7
Protein deglycase DJ-1.
    
 0.863
SQSTM1
Sequestosome-1.
    
 0.856
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.