TARBP1 protein (Alligator mississippiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TARBP1

Putative methyltransferase TARBP1 isoform B. (1299 aa)

Predicted Functional Partners:

MALSU1

0.800

MRPL47

0.793

MRPL17

0.777

SKIV2L2

0.770

MRPL21-1

0.762

GTPBP3

0.755

UTP20

0.740

PUS7L

0.708

GTPBP8-1

0.702

PDCD11

0.668

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GTPBP3	GTPBP8-1	A0A151NUT7	A0A151MCY0	tRNA modification GTPase GTPBP3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	GTP-binding protein 8 isoform B.	0.943
GTPBP3	MALSU1	A0A151NUT7	A0A151MQI5	tRNA modification GTPase GTPBP3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	Mitochondrial assembly of ribosomal large subunit protein 1.	0.826
GTPBP3	MRPL17	A0A151NUT7	A0A151P108	tRNA modification GTPase GTPBP3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	39S ribosomal protein L17, mitochondrial.	0.824
GTPBP3	MRPL21-1	A0A151NUT7	A0A151NXQ8	tRNA modification GTPase GTPBP3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	39S ribosomal protein L21, mitochondrial isoform A.	0.879
GTPBP3	MRPL47	A0A151NUT7	A0A151M6C6	tRNA modification GTPase GTPBP3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	39S ribosomal protein L47, mitochondrial.	0.824
GTPBP3	PUS7L	A0A151NUT7	A0A151PF02	tRNA modification GTPase GTPBP3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	Pseudouridylate synthase 7-like protein-like protein.	0.828
GTPBP3	TARBP1	A0A151NUT7	A0A151M2R2	tRNA modification GTPase GTPBP3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	Putative methyltransferase TARBP1 isoform B.	0.755
GTPBP8-1	GTPBP3	A0A151MCY0	A0A151NUT7	GTP-binding protein 8 isoform B.	tRNA modification GTPase GTPBP3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.943
GTPBP8-1	MALSU1	A0A151MCY0	A0A151MQI5	GTP-binding protein 8 isoform B.	Mitochondrial assembly of ribosomal large subunit protein 1.	0.882
GTPBP8-1	MRPL17	A0A151MCY0	A0A151P108	GTP-binding protein 8 isoform B.	39S ribosomal protein L17, mitochondrial.	0.853
GTPBP8-1	MRPL21-1	A0A151MCY0	A0A151NXQ8	GTP-binding protein 8 isoform B.	39S ribosomal protein L21, mitochondrial isoform A.	0.858
GTPBP8-1	MRPL47	A0A151MCY0	A0A151M6C6	GTP-binding protein 8 isoform B.	39S ribosomal protein L47, mitochondrial.	0.824
GTPBP8-1	PUS7L	A0A151MCY0	A0A151PF02	GTP-binding protein 8 isoform B.	Pseudouridylate synthase 7-like protein-like protein.	0.824
GTPBP8-1	TARBP1	A0A151MCY0	A0A151M2R2	GTP-binding protein 8 isoform B.	Putative methyltransferase TARBP1 isoform B.	0.702
MALSU1	GTPBP3	A0A151MQI5	A0A151NUT7	Mitochondrial assembly of ribosomal large subunit protein 1.	tRNA modification GTPase GTPBP3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.826
MALSU1	GTPBP8-1	A0A151MQI5	A0A151MCY0	Mitochondrial assembly of ribosomal large subunit protein 1.	GTP-binding protein 8 isoform B.	0.882
MALSU1	MRPL17	A0A151MQI5	A0A151P108	Mitochondrial assembly of ribosomal large subunit protein 1.	39S ribosomal protein L17, mitochondrial.	0.966
MALSU1	MRPL21-1	A0A151MQI5	A0A151NXQ8	Mitochondrial assembly of ribosomal large subunit protein 1.	39S ribosomal protein L21, mitochondrial isoform A.	0.972
MALSU1	MRPL47	A0A151MQI5	A0A151M6C6	Mitochondrial assembly of ribosomal large subunit protein 1.	39S ribosomal protein L47, mitochondrial.	0.950
MALSU1	PUS7L	A0A151MQI5	A0A151PF02	Mitochondrial assembly of ribosomal large subunit protein 1.	Pseudouridylate synthase 7-like protein-like protein.	0.824