STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGBD5PiggyBac transposable element-derived protein 5. (397 aa)    
Predicted Functional Partners:
SETMAR
Histone-lysine N-methyltransferase SETMAR.
    
 
 0.807
QRICH1
Glutamine-rich protein 1.
   
 
 0.781
THAP9
DNA transposase THAP9 isoform A.
    
 
 0.755
CD3E
T-cell surface glycoprotein CD3 epsilon chain.
   
 0.751
HARBI1
Putative nuclease HARBI1.
      
 0.678
CD247
T-cell surface glycoprotein CD3 zeta chain.
   
 0.667
ZMYM3
Zinc finger MYM-type protein 3 isoform B.
    
 
 0.662
RAG1
V(D)J recombination-activating protein 1; Catalytic component of the RAG complex, a multiprotein complex that mediates the DNA cleavage phase during V(D)J recombination. V(D)J recombination assembles a diverse repertoire of immunoglobulin and T-cell receptor genes in developing B and T- lymphocytes through rearrangement of different V (variable), in some cases D (diversity), and J (joining) gene segments. In the RAG complex, RAG1 mediates the DNA-binding to the conserved recombination signal sequences (RSS) and catalyzes the DNA cleavage activities by introducing a double-strand break [...]
    
 
 0.625
PTGR2
Prostaglandin reductase 2.
   
 
 0.617
NAIF1
Nuclear apoptosis-inducing factor 1.
   
  
 0.606
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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